In order to effectively help enterprises identify the digital influencing factors of low-carbon cold chain of agricultural products in Guangxi and accelerate the realization of low-carbonization of agricultural products cold chain enterprises, this paper constructs an evaluation index system of low-carbon cold chain of agricultural products in Guangxi under digital empowerment. Based on the data of cold chain energy of agricultural products in 11 cities of Guangxi from 2013 to 2022, the carbon emissions of cold chain of agricultural products in different cities were calculated. The results show that the consumption of cold chain energy of agricultural products in Guangxi is increasing in general from 2013 to 2022. Subsequently, the correlation analysis between the panel data of agricultural product cold chain carbon emissions and the panel data of digital factors in 11 cities in Guangxi was carried out. The results showed that the highest correlation was the degree of digital investment, and the lowest was the level of employee digitization. However, the correlation degree of all digital factors is higher than 0.6, which proves that digital factors have a high correlation with the low-carbon cold chain of agricultural products in Guangxi. This study provides a reference for how to realize low carbon in the cold chain of agricultural products in Guangxi by means of digitization.