With the continuous development of the global container liner transportation, container terminal operation receives more and more attention. However, many uncertain situations still bring considerable risk to the operation of container terminals, such as the container volume cyclical fluctuation of shipping route, which brings the overflow risk in the yard area and challenges the terminal consecutive operation of the original yard template plan. This paper considers the cyclical fluctuation characteristics of different shipping routes, and proposes a resilient model (an MILP model) of yard template generation. The proposed model aims to minimize the expected overflow number of containers during the planning period and makes the operation of yard space allocation implemented more efficiently and orderly. Numerical experiments are performed to validate the effectiveness and efficiency of the proposed model.