It is known that underestimation of human factor and insufficient attention to it is the principal risk in the field of management of complex technical systems (CTS) in conditions of the terrorist threats. The innovation aspects of organizational behavior presented by authors concern modern and specific approach to the dynamics of activity of terrorist and counterterrorism structures not only inside the CTS areas, but also in the adjacent areas, including the information, communication and control systems. Special attention has to be paid to growing international character of the terrorist and counterterrorist activity. In accordance with the estimation of modern situation in the field examined it is expedient to establish a new research project «Forecast and Prevention of Technogenic Emergencies Caused by the Troubles in the CTS Normal Operation as a Result of Terrorist Attacks» within the framework of NATO «SCIENCE FOR PEACE» program. The main targets of the project are the increasing of readiness of emergency forces on different levels to respond to the warning about the troubles, and prevention of accidents on critical facilities.