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EHR Text Categorization for Enhanced Patient-Based Document Navigation
Markus Kreuzthaler, Bastian Pfeifer, José Antonio Vera Ramos, Diether Kramer, Victor Grogger, Sylvia Bredenfeldt, Markus Pedevilla, Peter Krisper, Stefan Schulz
Patients with multiple disorders usually have long diagnosis lists, constitute by ICD-10 codes together with individual free-text descriptions. These text snippets are produced by overwriting standardized ICD-Code topics by the physicians at the point of care. They provide highly compact expert descriptions within a 50-character long text field frequently not assigned to a specific ICD-10 code. The high redundancy of these lists would benefit from content-based categorization within different hospital-based application scenarios. This work demonstrates how to accurately group diagnosis lists via a combination of natural language processing and hierarchical clustering with an overall F-measure value of 0.87. In addition, it compresses the initial diagnosis list up to 89%. The manuscript discusses pitfall and challenges as well as the potential of a large-scale approach for tackling this problem.
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